Zappa-Sz\'ep products of Garside monoids

A monoid $K$ is the internal Zappa-Sz\'ep product of two submonoids, if every element of $K$ admits a unique factorisation as the product of one element of each of the submonoids in a given order. This definition yields actions of the submonoids on each other, which we show to be structure preserving. We prove that $K$ is a Garside monoid if and only if both of the submonoids are Garside monoids. In this case, these factors are parabolic submonoids of $K$ and the Garside structure of $K$ can be described in terms of the Garside structures of the factors. We give explicit isomorphisms between the lattice structures of $K$ and the product of the lattice structures on the factors that respect the Garside normal forms. In particular, we obtain explicit natural bijections between the normal form language of $K$ and the product of the normal form languages of its factors.Comment: Published versio

On the cycling operation in braid groups

The cycling operation is a special kind of conjugation that can be applied to elements in Artin's braid groups, in order to reduce their length. It is a key ingredient of the usual solutions to the conjugacy problem in braid groups. In their seminal paper on braid-cryptography, Ko, Lee et al. proposed the {\it cycling problem} as a hard problem in braid groups that could be interesting for cryptography. In this paper we give a polynomial solution to that problem, mainly by showing that cycling is surjective, and using a result by Maffre which shows that pre-images under cycling can be computed fast. This result also holds in every Artin-Tits group of spherical type. On the other hand, the conjugacy search problem in braid groups is usually solved by computing some finite sets called (left) ultra summit sets (left-USS), using left normal forms of braids. But one can equally use right normal forms and compute right-USS's. Hard instances of the conjugacy search problem correspond to elements having big (left and right) USS's. One may think that even if some element has a big left-USS, it could possibly have a small right-USS. We show that this is not the case in the important particular case of rigid braids. More precisely, we show that the left-USS and the right-USS of a given rigid braid determine isomorphic graphs, with the arrows reversed, the isomorphism being defined using iterated cycling. We conjecture that the same is true for every element, not necessarily rigid, in braid groups and Artin-Tits groups of spherical type.Comment: 20 page

Conjugacy in Garside Groups III: Periodic braids

An element in Artin's braid group B_n is said to be periodic if some power of it lies in the center of B_n. In this paper we prove that all previously known algorithms for solving the conjugacy search problem in B_n are exponential in the braid index n for the special case of periodic braids. We overcome this difficulty by putting to work several known isomorphisms between Garside structures in the braid group B_n and other Garside groups. This allows us to obtain a polynomial solution to the original problem in the spirit of the previously known algorithms. This paper is the third in a series of papers by the same authors about the conjugacy problem in Garside groups. They have a unified goal: the development of a polynomial algorithm for the conjugacy decision and search problems in B_n, which generalizes to other Garside groups whenever possible. It is our hope that the methods introduced here will allow the generalization of the results in this paper to all Artin-Tits groups of spherical type.Comment: 33 pages, 13 figures. Classical references implying Corollaries 12 and 15 have been added. To appear in Journal of Algebr

Conjugacy in Garside groups I: Cyclings, powers, and rigidity

In this paper a relation between iterated cyclings and iterated powers of elements in a Garside group is shown. This yields a characterization of elements in a Garside group having a rigid power, where 'rigid' means that the left normal form changes only in the obvious way under cycling and decycling. It is also shown that, given X in a Garside group, if some power X^m is conjugate to a rigid element, then m can be bounded above by ||\Delta||^3. In the particular case of braid groups, this implies that a pseudo-Anosov braid has a small power whose ultra summit set consists of rigid elements. This solves one of the problems in the way of a polynomial solution to the conjugacy decision problem (CDP) and the conjugacy search problem (CSP) in braid groups. In addition to proving the rigidity theorem, it will be shown how this paper fits into the authors' program for finding a polynomial algorithm to the CDP/CSP, and what remains to be done.Comment: 41 page

Group-theoretic models of the inversion process in bacterial genomes

The variation in genome arrangements among bacterial taxa is largely due to the process of inversion. Recent studies indicate that not all inversions are equally probable, suggesting, for instance, that shorter inversions are more frequent than longer, and those that move the terminus of replication are less probable than those that do not. Current methods for establishing the inversion distance between two bacterial genomes are unable to incorporate such information. In this paper we suggest a group-theoretic framework that in principle can take these constraints into account. In particular, we show that by lifting the problem from circular permutations to the affine symmetric group, the inversion distance can be found in polynomial time for a model in which inversions are restricted to acting on two regions. This requires the proof of new results in group theory, and suggests a vein of new combinatorial problems concerning permutation groups on which group theorists will be needed to collaborate with biologists. We apply the new method to inferring distances and phylogenies for published Yersinia pestis data.Comment: 19 pages, 7 figures, in Press, Journal of Mathematical Biolog